Chloroplast Structure: Thylakoid, Grana and Stroma Explained

Biology · Cell: The Unit of Life · NEET

A chloroplast has three key parts. Thylakoids are flat membrane sacs. Grana are stacks of thylakoids, like piles of coins. Stroma is the fluid space around the grana. This matters for NEET because grana do the light reactions and stroma does the dark reactions of photosynthesis. Memory hook: "Thylakoid = coin, Grana = coin STACK, Stroma = the tray they sit on."
Chloroplast StructureDouble membraneStroma (fluid: enzymes, circular DNA, 70S ribosomes)Granum(thylakoid stack)stroma lamella= one thylakoid(chlorophyll here;lumen inside)
Chloroplast: thylakoids stack into grana (like piles of coins) inside the fluid stroma; stroma lamellae connect different grana. Chlorophyll sits in the thylakoids (light reaction); enzymes, circular DNA and 70S ribosomes sit in the stroma (dark reaction).

Your doubts, answered

What is the difference between thylakoid, grana and stroma?

They are three parts, one inside the other. A thylakoid is a single flat membrane sac. A granum (plural: grana) is a stack of many thylakoids, arranged like a pile of coins. The stroma is the thick fluid that fills the whole chloroplast and surrounds all the grana. So order from small to big: thylakoid -> granum (stack of thylakoids) -> stroma (fluid holding the stacks). NCERT says the thylakoids sit inside the stroma.

What is the difference between granum and grana?

It is just singular and plural. One stack of thylakoids is called a granum. Many stacks together are called grana. NEET Match-the-column questions use both words, so do not get confused. Granum = one stack. Grana = many stacks.

Are thylakoids inside grana or inside stroma?

Both, in a way. Thylakoids are stacked to FORM the grana. And the grana themselves float in the stroma. So a thylakoid is part of a granum, and that granum sits in the stroma. NCERT: 'A number of organised flattened membranous sacs called the thylakoids are present in the stroma... arranged in stacks like piles of coins called grana.'

What does the stroma of the chloroplast contain?

The stroma (the fluid inside the inner membrane) contains: enzymes for making carbohydrates and proteins, small double-stranded circular DNA, and 70S ribosomes. This is why the chloroplast is called semi-autonomous. NEET 2024 asked this directly: chloroplast DNA is circular and double-stranded, and it lives in the stroma.

What are stroma lamellae?

Stroma lamellae are flat membrane tubules that connect the thylakoids of DIFFERENT grana. Think of them as bridges joining one coin-stack to another coin-stack, running through the stroma. The thylakoids inside a single stack are the 'grana thylakoids'; the connecting ones are the 'stroma (intergranal) thylakoids'.

Where is chlorophyll present, in the thylakoid or the stroma?

Chlorophyll pigments are present in the THYLAKOIDS, not in the stroma. That is why the grana (stacks of thylakoids) trap light and carry out the light reactions. The stroma has no chlorophyll; it does the dark reactions (making sugar) using enzymes.

Is the space inside a thylakoid the same as the stroma?

No. The space enclosed by the thylakoid membrane is called the lumen. It is separate from the stroma. So there are two different fluid spaces: the lumen (inside each thylakoid sac) and the stroma (outside the thylakoids, inside the inner chloroplast membrane).

⚠️ The NEET trap
Thylakoids are the disc-shaped sacs of the Golgi apparatus, and cristae are the sacs in the stroma of plastids.
Thylakoids are the flattened membranous sacs in the STROMA of plastids (chloroplasts). Cristae are the infoldings of the inner mitochondrial membrane. Cisternae are the disc-shaped sacs of the Golgi apparatus.
🧠 NEET loves Match-the-column here. Lock it: Thylakoid -> stroma of plastid, Cristae -> mitochondria infolds, Cisternae -> Golgi. Mixing these up is the #1 trap.

Real NEET questions

NEET 2021

Match List-I with List-II: (a) Cristae (b) Thylakoid (c) Centromere (d) Cisternae | (i) Primary constriction in chromosome (ii) Disc-shaped sacs in Golgi apparatus (iii) Infoldings in mitochondria (iv) Flattened membranous sacs in stroma of plastids

A · (a)-(iii), (b)-(iv), (c)-(i), (d)-(ii)
B · (a)-(ii), (b)-(iii), (c)-(iv), (d)-(i)
C · (a)-(iv), (b)-(iii), (c)-(ii), (d)-(i)
D · (a)-(i), (b)-(iv), (c)-(iii), (d)-(ii)
Solution: Thylakoid = flattened membranous sacs in the stroma of plastids (iv). Cristae = infoldings of the inner mitochondrial membrane (iii). Cisternae = disc-shaped sacs of Golgi (ii). Centromere = primary constriction of chromosome (i). So the match is (a)-(iii), (b)-(iv), (c)-(i), (d)-(ii), which is option A.
NEET 2024

The DNA present in chloroplast is

A · Circular, double stranded
B · Linear, single stranded
C · Circular, single stranded
D · Linear, double stranded
Solution: NCERT states the stroma of the chloroplast contains small, double-stranded circular DNA molecules along with 70S ribosomes. So chloroplast DNA is circular and double-stranded (option A). This DNA lets the chloroplast make some of its own proteins, so it is called semi-autonomous.
NEET 2024

Statement I: Mitochondria and chloroplasts are both double membrane bound organelles. Statement II: Inner membrane of Mitochondria is relatively less permeable, as compared to chloroplast.

A · Both Statement I and Statement II are incorrect
B · Statement I is correct but Statement II is incorrect
C · Statement I is incorrect but Statement II is correct
D · Both Statement I and Statement II are correct
Solution: Statement I is correct: both are double membrane bound. Statement II is incorrect: NCERT says it is the inner CHLOROPLAST membrane that is relatively less permeable, not the mitochondrial one. So option B.

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Frequently asked

Is the chloroplast single or double membrane bound?

Double membrane bound, like the mitochondrion. Of the two membranes, the inner chloroplast membrane is relatively less permeable. The space inside the inner membrane is the stroma.

What is the site of light reaction and dark reaction in a chloroplast?

The grana (stacks of thylakoids) are the site of the light reactions. The stroma is the site of the dark reactions (carbon fixation, sugar making).

Why is the chloroplast called semi-autonomous?

Because its stroma contains its own double-stranded circular DNA and 70S ribosomes, so it can make some of its own proteins and divide by fission. But it still depends on the nucleus for other proteins.

What is the lumen of a thylakoid?

The lumen is the space enclosed by the thylakoid membrane. It is a separate compartment from the stroma. Protons build up in the lumen during the light reaction.

What size are chloroplasts and how many per cell?

NCERT: chloroplasts are 5-10 micrometre long and 2-4 micrometre wide, usually lens-shaped or oval. Numbers range from 1 per cell in the alga Chlamydomonas to 20-40 per cell in leaf mesophyll.