RNA Polymerase I, II and III in Eukaryotes

Biology · Molecular Basis of Inheritance · NEET

Eukaryotes have three RNA polymerases inside the nucleus. RNA polymerase I makes rRNAs (28S, 18S and 5.8S). RNA polymerase II makes hnRNA, which is the precursor of mRNA. RNA polymerase III makes tRNA, 5S rRNA and snRNAs. Memory hook: "1-r, 2-m, 3-t" — Pol I = rRNA, Pol II = mRNA precursor, Pol III = tRNA.
Three RNA Polymerases in EukaryotesRNA Pol IRNA Pol IIRNA Pol IIImakes rRNA28S, 18S,5.8Shook: 1 = rRNAmakes hnRNA(precursor ofmRNA)hook: 2 = mRNAmakes tRNA,5S rRNA,snRNAhook: 3 = tRNA
Division of labour among the three eukaryotic RNA polymerases. Note that 5S rRNA and snRNA go with Pol III, not Pol I — a common NEET trap.

Your doubts, answered

How many RNA polymerases are there in eukaryotes?

There are three nuclear RNA polymerases in eukaryotes: RNA polymerase I, II and III. This is different from prokaryotes, where a single RNA polymerase does all the transcription. This division of work is a very common NEET question, so remember the number three.

Which RNA polymerase makes mRNA in eukaryotes?

RNA polymerase II makes the mRNA precursor. It does not make finished mRNA directly. It first makes hnRNA (heterogeneous nuclear RNA), which is later processed (capping, tailing, splicing) into mature mRNA. So when NEET asks 'which enzyme synthesizes precursor mRNA', the answer is RNA polymerase II.

Which RNA polymerase transcribes rRNA?

RNA polymerase I transcribes the rRNAs 28S, 18S and 5.8S. But be careful: the 5S rRNA is NOT made by Pol I. The 5S rRNA is made by RNA polymerase III. NEET loves to test this exact split, so learn 5S rRNA separately.

What does RNA polymerase III transcribe?

RNA polymerase III transcribes tRNA, 5S rRNA and snRNAs (small nuclear RNAs). Notice it makes the 'small' and helper RNAs. A simple hook: Pol III does the 'tiny team' — transfer RNA, the small 5S rRNA, and the small nuclear RNAs.

Are RNA polymerases in prokaryotes and eukaryotes the same?

No. Prokaryotes (like E. coli) have only ONE RNA polymerase that makes all types of RNA (mRNA, tRNA, rRNA). Eukaryotes have THREE separate RNA polymerases, each making different RNAs. This one-vs-three difference is a favourite NEET trap.

Does 5S rRNA come from RNA polymerase I or III?

The 5S rRNA comes from RNA polymerase III, not Pol I. RNA polymerase I makes only the 28S, 18S and 5.8S rRNAs. This tiny detail (5S with Pol III) is a classic NEET distractor, so mark it clearly.

⚠️ The NEET trap
RNA polymerase I transcribes all rRNAs including 5S rRNA.
RNA polymerase I transcribes only 28S, 18S and 5.8S rRNAs. The 5S rRNA is transcribed by RNA polymerase III (along with tRNA and snRNAs).
🧠 NEET puts 5S rRNA with Pol I to trap you. Always send 5S rRNA to Pol III. Pol I = big rRNAs (28S, 18S, 5.8S) only.

Real NEET questions

NEET 2019

Match the following RNA polymerase with their transcribed products: (a) RNA polymerase I (b) RNA polymerase II (c) RNA polymerase III; (i) tRNA (ii) rRNA (iii) hnRNA

A · a-i, b-iii, c-ii
B · a-i, b-ii, c-iii
C · a-ii, b-iii, c-i
D · a-iii, b-ii, c-i
Solution: Pol I makes rRNA (ii), Pol II makes hnRNA / mRNA precursor (iii), Pol III makes tRNA (i). So a-ii, b-iii, c-i. Remember 1-r, 2-m(hnRNA), 3-t.
NEET 2021

What is the role of RNA polymerase III in the process of transcription in eukaryotes?

A · Transcribes precursor of mRNA
B · Transcribes only snRNAs
C · Transcribes rRNAs (28S, 18S and 5.8S)
D · Transcribes tRNA, 5S rRNA and snRNA
Solution: RNA polymerase III transcribes tRNA, 5S rRNA and snRNAs. Option (B) is a trap: it does NOT make only snRNAs, it makes all three. Pol I makes 28S/18S/5.8S rRNA; Pol II makes mRNA precursor.
ReNEET 2026

Which of the following enzymes synthesizes precursor mRNA?

A · RNA polymerase I
B · RNA polymerase II
C · RNA polymerase III
D · DNA polymerase
Solution: RNA polymerase II transcribes the precursor of mRNA, the heterogeneous nuclear RNA (hnRNA). Pol I makes rRNAs; Pol III makes tRNA, 5S rRNA and snRNAs.

Solved Molecular Basis of Inheritance NEET PYQs

Try the real previous-year questions from this chapter — each with the answer and a full solution.

See all 88 Molecular Basis of Inheritance NEET PYQs ›
Next concept: Post-Transcriptional ModificationsKeep learning — 2 minFeeling ready? Solve the Molecular Basis of Inheritance NEET PYQs ›Or practice on your phone — get the free MedicNEET app ›

Frequently asked

What is the function of RNA polymerase I, II and III?

RNA polymerase I makes rRNAs (28S, 18S, 5.8S). RNA polymerase II makes hnRNA (the precursor of mRNA). RNA polymerase III makes tRNA, 5S rRNA and snRNAs. All three work inside the nucleus of eukaryotic cells.

Which RNA polymerase is most important for protein synthesis?

RNA polymerase II is the key one for protein-coding genes, because it makes the mRNA precursor (hnRNA). This hnRNA is processed into mRNA, which carries the code for proteins. So Pol II is directly linked to gene expression.

Do prokaryotes have RNA polymerase I, II and III?

No. Prokaryotes have only a single RNA polymerase that makes mRNA, tRNA and rRNA all together. The three-enzyme system (I, II, III) is found only in eukaryotes.

Where do RNA polymerase I, II and III work?

All three are nuclear enzymes, meaning they work inside the nucleus. RNA polymerase I mostly works in the nucleolus (where ribosomal RNA is made), while Pol II and Pol III work in the nucleoplasm.

Is snRNA made by RNA polymerase II or III?

snRNAs (small nuclear RNAs) are transcribed by RNA polymerase III, according to NCERT. They help in splicing. Do not confuse snRNA (Pol III) with hnRNA (Pol II).