DNA Fingerprinting: Steps and Applications

Biology · Molecular Basis of Inheritance · NEET

DNA fingerprinting is a technique to identify a person from the differences in their repetitive DNA (called VNTRs). The 6 steps in order are: isolate DNA, cut it with restriction enzymes, separate fragments by electrophoresis, blot (transfer) them to a membrane, hybridise with a labelled VNTR probe, and read the pattern by autoradiography. Memory hook: "I Digest, Everyone Blots, Probe, Photo" -> I-D-E-B-P-P.
6 Steps of DNA Fingerprinting1. IsolateDNA2. Digestrestriction enz.3. Separateelectrophoresis4. Blotto membrane5. HybridiseVNTR probe6. Detectautoradio.Memory order (NCERT):Isolate -> Digest -> Electrophorese -> Blot -> Probe -> PhotoNEET trap:Zinc finger analysis is NOT used.Basis = DNA polymorphism in VNTRs (repetitive DNA).
The six NCERT steps of DNA fingerprinting in order: isolate DNA, digest with restriction enzymes, separate by electrophoresis, blot to a membrane, hybridise with a labelled VNTR probe, and detect by autoradiography. Note the common NEET trap: zinc finger analysis is not part of the technique.

Your doubts, answered

What is the correct sequence of steps in DNA fingerprinting?

The NCERT order is: (i) isolation of DNA, (ii) digestion of DNA by restriction endonucleases, (iii) separation of DNA fragments by electrophoresis, (iv) transferring (blotting) the fragments to a synthetic membrane, (v) hybridisation using a labelled VNTR probe, and (vi) detection of hybridised fragments by autoradiography. NEET loves this exact order, so memorise it as: Isolate, Digest, Electrophorese, Blot, Probe, Photo.

What is a VNTR and why is it used in DNA fingerprinting?

VNTR means Variable Number of Tandem Repeats. It is a short DNA sequence repeated many times, and the number of repeats is different in every person. This variation (polymorphism) is high, so the VNTR pattern acts like a unique barcode. A labelled VNTR probe binds to these repeat regions to reveal the pattern.

Is zinc finger analysis a step in DNA fingerprinting?

No. Zinc finger analysis is NOT used in DNA fingerprinting and is a common NEET trap. The real requirements are restriction enzymes, DNA-DNA hybridisation with a VNTR probe, and (in modern methods) PCR. A zinc finger is a protein motif that binds DNA, but it has no role in the fingerprinting technique.

What does the restriction enzyme (restriction endonuclease) do here?

The restriction endonuclease cuts the isolated DNA at specific sites into many small fragments. This is step (ii). Cutting is needed so that the fragments can then be separated by size using gel electrophoresis, which sorts them into a pattern that can be probed.

What is blotting / Southern blotting in DNA fingerprinting?

After electrophoresis, the separated DNA fragments are transferred (blotted) from the gel onto a synthetic membrane, such as nitrocellulose or nylon. This transfer of DNA is called Southern blotting, named after Edwin Southern. It keeps the fragments in the same pattern so the VNTR probe can bind them.

Who developed DNA fingerprinting and how is sensitivity increased?

DNA fingerprinting was developed by Alec Jeffreys. In India, it was applied by Lalji Singh and V.K. Kashyap. The sensitivity of the technique is increased by using the Polymerase Chain Reaction (PCR), which amplifies tiny amounts of DNA so even a very small sample gives a clear result.

⚠️ The NEET trap
Choosing 'Zinc finger analysis' as a technique that IS required for DNA fingerprinting.
Zinc finger analysis is NOT required. DNA fingerprinting needs restriction enzymes, DNA-DNA hybridisation (VNTR probe), and PCR.
🧠 The question is often worded 'NOT required' - read it twice. Zinc finger = protein motif, not a fingerprinting step. This exact trap appeared in NEET 2016.

Real NEET questions

NEET 2026

Arrange the following steps of DNA fingerprinting in the correct sequence. A. Isolation of DNA and its digestion by restriction endonucleases. B. Hybridisation using a labelled VNTR probe. C. Transferring of separated DNA fragments to synthetic membranes. D. Detection of hybridised DNA fragments by autoradiography. E. Separation of DNA fragments by electrophoresis.

A · A, B, D, C, E
B · A, D, B, E, C
C · A, E, C, B, D
D · A, E, B, C, D
Solution: Correct order: isolation and digestion (A) -> separation by electrophoresis (E) -> blotting to membrane (C) -> hybridisation with labelled VNTR probe (B) -> detection by autoradiography (D). So the sequence is A, E, C, B, D. NCERT Ch 5, p.106.
NEET 2016

Which of the following is not required for any of the techniques of DNA fingerprinting available at present?

A · Polymerase chain reaction
B · Zinc finger analysis
C · Restriction enzymes
D · DNA - DNA hybridization
Solution: Zinc finger analysis is not used in DNA fingerprinting. The technique uses restriction enzymes to cut DNA, DNA-DNA hybridisation with a VNTR probe, and PCR to amplify DNA and increase sensitivity. NCERT Ch 5, p.106.
NEET 2022

DNA polymorphism forms the basis of:

A · Genetic mapping
B · DNA fingerprinting
C · Both genetic mapping and DNA fingerprinting
D · Translation
Solution: DNA polymorphism (variation in repetitive/satellite DNA) forms the basis of DNA fingerprinting. NCERT also states polymorphism is the basis of genetic mapping and DNA fingerprinting, so option C is arguably more complete, but the official NEET key marked (B). NCERT Ch 5, p.105.

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Frequently asked

What is DNA fingerprinting in simple words?

It is a lab method that finds the differences in repetitive DNA (VNTRs) between people. Because these repeat patterns are unique to each person (except identical twins), the technique can identify a person or check family relationships.

How many steps are there in DNA fingerprinting?

There are 6 steps: isolation of DNA, digestion by restriction endonucleases, separation by electrophoresis, blotting onto a membrane, hybridisation with a labelled VNTR probe, and detection by autoradiography.

What are the main applications of DNA fingerprinting?

It is used in forensic science (to identify criminals or victims), paternity and maternity testing, identifying family and evolutionary relationships, and studying genetic diversity in populations.

Why is VNTR called a good marker for DNA fingerprinting?

VNTRs show a very high degree of polymorphism, meaning the number of repeats varies greatly between individuals. This high variation makes each person's pattern nearly unique, so it works like a genetic barcode.

What is the role of PCR in DNA fingerprinting?

PCR (Polymerase Chain Reaction) amplifies (makes many copies of) DNA. It increases the sensitivity of the technique so that even a very small or old DNA sample can be analysed.