DNA Polymorphism and VNTRs: The Basis of DNA Fingerprinting

Biology · Molecular Basis of Inheritance · NEET

DNA polymorphism means an inheritable change in the DNA sequence that is found in a population with a frequency higher than 0.01. This variation is highest in repetitive DNA, especially in VNTR (Variable Number of Tandem Repeats), which is a mini-satellite DNA. Because the number of repeats in a VNTR is different in almost every person, VNTR polymorphism forms the basis of DNA fingerprinting. Memory hook: "Same short sentence repeated a different number of times in every person" = VNTR.
VNTR: Same repeat, different copy number per personPerson A3 repeats (short VNTR)Person B5 repeats (longer VNTR)Person C2 repeats (shortest VNTR)Repeat unit is the SAME sequence; only the COPY NUMBER differs → high polymorphism → basis of DNA fingerprinting. Size: 0.1 to 20 kb.
A VNTR is one short DNA sequence repeated in tandem. The repeat unit is identical, but the number of copies differs from person to person. This high variation (size 0.1 to 20 kb) makes VNTR the polymorphic region used in DNA fingerprinting.

Your doubts, answered

What is DNA polymorphism in simple words?

DNA polymorphism is a change (mutation) in a DNA sequence that is passed on to the next generation and is present in a population at a frequency greater than 0.01. In simple words, it means the same spot (locus) in the DNA has more than one version (allele) among people. NCERT calls a variation a DNA polymorphism only if more than one variant occurs at a locus with frequency greater than 0.01. Most of this variation lies in the non-coding, repetitive parts of DNA, so it usually does not change the phenotype but is very useful to identify a person.

What is a VNTR and what is its full form?

VNTR stands for Variable Number of Tandem Repeats. It is a short DNA sequence that is repeated one after another (tandemly) many times. The word 'variable number' is the key: the copy number of the repeat is different from chromosome to chromosome and from person to person. This makes VNTR show a very high degree of polymorphism, which is why it is used in DNA fingerprinting.

Is VNTR a satellite DNA or a mini-satellite?

Both are correct, but be precise. NCERT says the VNTR belongs to a class of satellite DNA that is called mini-satellite. So satellite DNA is the big family, and mini-satellite is the specific type to which VNTR belongs. In NEET, if the question asks the exact class, the answer is mini-satellite.

Why is VNTR used in DNA fingerprinting and not normal genes?

About 99.9 per cent of the base sequence is the same in all humans, so normal genes are almost identical and cannot tell two people apart. VNTR repeat numbers, however, vary a lot between people (the size of a VNTR ranges from 0.1 to 20 kb). This high variation gives each person a nearly unique pattern of band sizes after hybridisation with a VNTR probe, so VNTR is ideal for identifying individuals.

What is the difference between DNA polymorphism and a mutation?

Every polymorphism starts as a mutation, but not every mutation is a polymorphism. A mutation is any change in DNA. It becomes a DNA polymorphism only when it is inheritable (passed through germ cells) AND is present in the population at a frequency greater than 0.01. So polymorphism is a common, heritable, population-level variation, while a mutation can be rare or even present in a single individual.

What forms the basis of DNA fingerprinting?

DNA polymorphism in repetitive DNA (specifically VNTR) forms the basis of DNA fingerprinting. NEET 2022 asked exactly this: 'DNA polymorphism forms the basis of:' and the official answer is DNA fingerprinting. NCERT also states that polymorphism is the basis of genetic mapping of the human genome as well as of DNA fingerprinting, so read the options carefully.

⚠️ The NEET trap
DNA fingerprinting identifies differences in unique single-copy genes, so the specific regions used are single nucleotides.
DNA fingerprinting identifies differences in repetitive DNA, where a small stretch of DNA is repeated many times. This repetitive DNA (VNTR / mini-satellite) is where polymorphism is highest.
🧠 NEET 2021 gave the tempting option 'Single nucleotides' and 'Satellite DNA', but the exact NCERT word for the specific region is Repetitive DNA. Match the exact NCERT line, not the closest-sounding word.

Real NEET questions

2022

DNA polymorphism forms the basis of:

A · Genetic mapping
B · DNA fingerprinting
C · Both genetic mapping and DNA fingerprinting
D · Translation
Solution: DNA polymorphism (variation in repetitive / satellite DNA) forms the basis of DNA fingerprinting; the official NEET key marks (B). Note: NCERT (p.105) says polymorphism is the basis of genetic mapping of the human genome AND of DNA fingerprinting, so option (C) is arguably more complete, but the exam key is (B). Rule for NEET: pick the answer the NCERT sentence directly supports for the named technique.
2021

DNA fingerprinting involves identifying differences in some specific regions in DNA sequence, called as:

A · Single nucleotides
B · Polymorphic DNA
C · Satellite DNA
D · Repetitive DNA
Solution: NCERT (Ch 5): 'DNA fingerprinting involves identifying differences in some specific regions in DNA sequence called as repetitive DNA, because in these sequences a small stretch of DNA is repeated many times.' So the exact answer is Repetitive DNA (D), even though Satellite DNA sounds close.
2016

Which of the following is not required for any of the techniques of DNA fingerprinting available at present?

A · Polymerase chain reaction
B · Zinc finger analysis
C · Restriction enzymes
D · DNA-DNA hybridization
Solution: DNA fingerprinting uses restriction enzymes to cut DNA, DNA-DNA hybridization with a labelled VNTR probe, and (in modern methods) PCR to amplify DNA. Zinc finger analysis is unrelated to DNA fingerprinting, so (B) is 'not required'.

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Frequently asked

What is the full form of VNTR?

VNTR stands for Variable Number of Tandem Repeats. It is a short DNA sequence repeated one after another (tandemly), and the number of repeats varies between individuals.

What is the size range of a VNTR?

According to NCERT, the size of a VNTR varies from 0.1 kb to 20 kb. This large variation in size is what produces the different band patterns seen in DNA fingerprinting.

To which class of DNA does VNTR belong?

VNTR belongs to a class of satellite DNA called mini-satellite. A small DNA sequence is arranged tandemly in many copy numbers, and this copy number varies from chromosome to chromosome.

At what frequency is a variation called a DNA polymorphism?

A variation is called a DNA polymorphism when more than one variant (allele) at a locus occurs in the population with a frequency greater than 0.01, and the variation is inheritable.

Why can DNA fingerprinting identify a person when 99.9 percent of human DNA is the same?

The identification uses the 0.1 percent that differs. This difference is greatest in repetitive VNTR regions, where the number of repeats is nearly unique in each person, giving each individual a distinct pattern.